Package: SoupX
Title: Single Cell mRNA Soup eXterminator
Version: 1.6.2
Date: 2022-11-01
Author: Matthew Daniel Young
Maintainer: Matthew Daniel Young <my4@sanger.ac.uk>
Description: Quantify, profile and remove ambient mRNA contamination
        (the "soup") from droplet based single cell RNA-seq
        experiments.  Implements the method described in Young et al.
        (2018) <doi:10.1101/303727>.
URL: https://github.com/constantAmateur/SoupX
Suggests: knitr, rstan, DropletUtils, rmarkdown, formatR
VignetteBuilder: knitr
Imports: ggplot2, Matrix, methods, Seurat (>= 3.2.2)
Depends: R (>= 3.5.0)
LazyData: true
LazyDataCompression: xz
License: GPL-2
Encoding: UTF-8
RoxygenNote: 7.1.1
NeedsCompilation: no
Packaged: 2026-06-10 07:20:21 UTC; root
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev python3 zlib1g-dev
Repository: https://constantamateur.r-universe.dev
Date/Publication: 2022-11-01 13:12:09 UTC
RemoteUrl: https://github.com/constantamateur/soupx
RemoteRef: HEAD
RemoteSha: 8d89492306a7e82a79a3c0588b806d5127f2003c